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Getting started

Ethoscopy

Installing ethoscopy as a docker container with ethoscope-lab (recommended). The ethoscope-lab d...

Updated 1 week ago by Laurence Blackhurst

Basic methods

Ethoscopy Behavpy

Behavpy has lots of built in methods to manipulate your data. The next few sections will walk you...

Updated 1 month ago by Laurence Blackhurst

Periodograms

Ethoscopy Behavpy - Circadian analysis

Periodograms are essential for definitely showing periodicity in a quantifiable way. Periodogra...

Updated 2 months ago by Laurence Blackhurst

Circadian methods and plots

Ethoscopy Behavpy - Circadian analysis

The below methods and plots should give a good insight into your specimens circadian rhythm. If y...

Updated 2 months ago by Laurence Blackhurst

Jupyter tutorials

Ethoscopy

Ethoscopy is best used in a Jupyter instance. We provide a pre-baked docker container that comes ...

Updated 3 months ago by Laurence Blackhurst

Visualising with the HMM

Ethoscopy Behavpy - Hidden Markov Model

The best way to get to grips with your newly trained HMM is to decode some data and has a look at...

Updated 3 months ago by Laurence Blackhurst

Training an HMM

Ethoscopy Behavpy - Hidden Markov Model

Behavpy_HMM is an extension of behavpy that revolves around the use of Hidden Markov Models (HMM)...

Updated 3 months ago by Laurence Blackhurst

Visualising your data

Ethoscopy Behavpy

Once the behavpy object is created, the print function  will just show your data structure. If yo...

Updated 3 months ago by Laurence Blackhurst

About

Ethoscopy Behavpy

Behavpy is the default object in ethoscopy, a way of storing your metadata and data in a single s...

Updated 3 months ago by Laurence Blackhurst

Loading the data

Ethoscopy

Setting up To begin you need three paths saved as variables: the path to the metadata .csv fi...

Updated 3 months ago by Laurence Blackhurst

Metadata design

Ethoscopy

What is the metadata? The metadata is a simple .csv file that contains the information to (1) fi...

Updated 4 months ago by Giorgio Gilestro