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Ethoscopy Behavpy

Behavpy is the default object in ethoscopy, a way of storing your metadata and data in a single s...

Updated 6 months ago by Laurence Blackhurst

Basic methods

Ethoscopy Behavpy

Behavpy has lots of built in methods to manipulate your data. The next few sections will walk you...

Updated 6 months ago by Laurence Blackhurst

Loading the data

Ethoscopy

Setting up To begin you need three paths saved as variables: the path to the metadata .csv fi...

Updated 6 months ago by Laurence Blackhurst

Getting started

Ethoscopy

Installing ethoscopy as a docker container with ethoscope-lab (recommended). The ethoscope-lab d...

Updated 6 months ago by Laurence Blackhurst

Visualising your data

Ethoscopy Behavpy

Once the behavpy object is created, the print function  will just show your data structure. If yo...

Updated 11 months ago by Laurence Blackhurst

Jupyter tutorials

Ethoscopy

Ethoscopy is best used in a Jupyter instance. We provide a pre-baked docker container that comes ...

Updated 1 year ago by Laurence Blackhurst

Visualising mAGO data

Ethoscopy Behavpy

Within the Gilestro lab we have special adaptations to the ethoscope which includes the mAGO, a m...

Updated 1 year ago by Laurence Blackhurst

Visualising with the HMM

Ethoscopy Behavpy - Hidden Markov Model

The best way to get to grips with your newly trained HMM is to decode some data and has a look at...

Updated 1 year ago by Laurence Blackhurst

Periodograms

Ethoscopy Behavpy - Circadian analysis

Periodograms are essential for definitely showing periodicity in a quantifiable way. Periodogra...

Updated 1 year ago by Laurence Blackhurst

Circadian methods and plots

Ethoscopy Behavpy - Circadian analysis

The below methods and plots should give a good insight into your specimens circadian rhythm. If y...

Updated 1 year ago by Laurence Blackhurst

Training an HMM

Ethoscopy Behavpy - Hidden Markov Model

Behavpy_HMM is an extension of behavpy that revolves around the use of Hidden Markov Models (HMM)...

Updated 1 year ago by Laurence Blackhurst

Metadata design

Ethoscopy

What is the metadata? The metadata is a simple .csv file that contains the information to (1) fi...

Updated 1 year ago by Giorgio Gilestro