Ethoscopy

Ethoscopy user manual

Installing ethoscopy as a docker container with ethoscope-lab (recommended). The ethoscope-lab d...

What is the metadata? The metadata is a simple .csv file that contains the information to (1) fi...

Setting up To begin you need three paths saved as variables: the path to the metadata .csv fi...

Behavpy is the default object in ethoscopy, a way of storing your metadata and data in a single s...

Behavpy has lots of built in methods to manipulate your data. The next few sections will walk you...

Once the behavpy object is created, the print function will just show your data structure. If yo...

Within the Gilestro lab we have special adaptations to the ethoscope which includes the mAGO, a m...

At the Gilestro lab we work on sleep and often need to do a lot of circadian analysis to complime...

The below methods and plots should give a good insight into your specimens circadian rhythm. If y...

Periodograms are essential for definitely showing periodicity in a quantifiable way. Periodogra...

Behavpy_HMM is an extension of behavpy that revolves around the use of Hidden Markov Models (HMM)...

Behavpy_HMM is an extension of behavpy that revolves around the use of Hidden Markov Models (HMM)...

The best way to get to grips with your newly trained HMM is to decode some data and has a look at...

Ethoscopy is best used in a Jupyter instance. We provide a pre-baked docker container that comes ...